edQTL Data Browser




Choose an edQTL event to plot




Choose an ASED event to plot


Column Definitions

edQTL

  1. Chrom - Chromsome of RNA editing site

  2. Position - Genomic position of RNA editing site

  3. Gene - Annotated gene of RNA editing site

  4. Tissue - GTEx tissue for the event

  5. SNP - Closest, most significant edQTL SNP

  6. edQTL P-value - most significant edQTL p-value

  7. edQTL effect size - effect size of edQTL event

  8. Coloc PP - Posterior probability of colocalizaion between edQTL and eQTL

ASED

  1. Chrom - Chromsome of RNA editing site

  2. Position - Genomic position of RNA editing site

  3. Gene - Annotated gene of RNA editing site

  4. Tissue - GTEx tissue for the event

  5. SNP - Closest, most significant edQTL SNP

  6. P-value - most significant ASED p-value

  7. dFI - change in Frequency of Inosine (change in RNA editing rates between two alleles)

References

  1. Genetic variation and microRNA targeting of A-to-I RNA editing fine tune human tissue transcriptomes. In review.

  2. Park E, Guo J, Shen S, Demirdjian L, Wu YN, Lin L, Xing Y. (2017) Population and allelic variation of A-to-I RNA editing in human transcriptomes. Genome Biology, 18:143.

Contacts